Table 4 List of known attenuators in B. subtilis compared with predictions in six other genomes of gram-positive bacteria
From: Identification of attenuation and antitermination regulation in prokaryotes
B. subtilis | B. halodurans | L. innocua | S. aureus | C. acetobutylicum | L. lactis | S. pneumoniae | ||||||||
ID | Z-score | IDa | No. of predictionsb | IDa | No. of predictionsb | IDa | No. of predictionsb | IDa | No. of predictionsb | IDa | No. of predictionsb | IDa | No. of predictionsb | Genec |
BS0929 | -8.895 | BH1095 | 1 | lin1331 | 1 | SAV1302 | 0 | - | - | L0013 | 0 | SP2185 | 0 | glycerol-3-phosphate dehydrogenase |
(glpD) | ||||||||||||||
BS2825 | -8.473 | BH3061 | 1 | lin2091 | 0 | SAV2054 | 0 | CAC3169 | 0 | L0078 | 0 | SP0445 | 0 | acetolactate synthase (large subunit) |
(ilvB) | ||||||||||||||
BS3920 | -6.468 | BH0296 | 1 | lin0026 | 1 | - | - | CAC1407 | 1 | L90678 | 0 | SP0577 | 0 | PTS beta-glucoside-specific enzyme |
II ABC component (bglP) | ||||||||||||||
BS2733 | -6.238 | BH1267 | 1 | lin1539 | 1 | SAV1618 | 1 | CAC1678 | 1 | L0343 | 1 | SP1383 | 0 | alanyl-tRNA synthetase (alaS) |
BS0013 | -6.126 | BH0024 | 1 | lin2890 | 1 | SAV0009 | 1 | CAC0021 | 0 | L150515 | 1 | SP0411 | 1 | seryl-tRNA synthetase (serS) |
BS2749 | -5.839 | BH1251 | 2 | lin1555 | 1 | SAV1631 | 1 | CAC2740 | 0 | L0342 | 0 | SP2121 | 0 | histidyl-tRNA synthetase (hisS) |
BS2520 | -5.815 | BH1370 | 1 | lin1496 | 1 | - | - | - | - | L101560 | 0 | SP1475 | 0 | glycyl-tRNA synthetase (alpha |
subunit) (glyQ) | ||||||||||||||
BS3396 | -5.767 | - | - | - | - | - | - | - | - | L18622 | 1 | - | - | amino acid permease (yvbW) |
BS0215 | -5.526 | - | - | - | - | SAV0337 | 0 | - | - | L148346 | 0 | - | - | glycerol-3-phosphate permease |
(glpT) | ||||||||||||||
BS1544 | -5.239 | BH2545 | 1 | lin2127 | 1 | SAV1193 | 1 | CAC3038 | 1 | L0350 | 1 | SP1659 | 1 | isoleucyl-tRNA synthetase (ileS) |
BS3798 | -5.164 | BH1856 | 0 | - | - | - | - | CAC0423 | 1 | - | - | - | - | PTS sucrose-specific enzyme II BC |
component (sacP) | ||||||||||||||
BS1319 | -5.124 | BH0438 | 1 | lin1789 | 1 | SAV0356 | 0 | - | - | L0100 | 0 | SP0585 | 0 | cobalamin-independent methionine |
synthase (metC) | ||||||||||||||
BS3750 | -4.958 | - | - | - | - | - | - | CAC2362 | 1 | - | - | - | - | threonyl-tRNA synthetase (thrZ) |
BS3440 | -4.890 | - | - | - | - | - | - | CAC1772 | 0 | - | - | - | - | levansucrase (sacB) |
BS2204 | -4.819 | BH1514 | 1 | lin1998 | 1 | SAV0388 | 1 | CAC0873 | 0 | L159396 | 1 | SP1847 | 0 | xanthine phosphoribosyltransferase |
(xpt) | ||||||||||||||
BS2139 | -4.756 | - | - | - | - | - | - | - | - | - | - | - | - | N-acetylmuramoyl-L-alanine amidase |
(yomC) | ||||||||||||||
BS2803 | -4.750 | BH3038 | 1 | lin1587 | 1 | SAV1663 | 1 | CAC2399 | 2 | L0351 | 1 | SP0568 | 0 | valyl-tRNA synthetase (valS) |
BS0093 | -4.747 | BH0110 | 1 | lin0270 | 0 | SAV0529 | 1 | CAC0687 | 1 | L0087 | 1 | SP0589 | 0 | serine acetyltransferase (cysE) |
BS1357 | -4.680 | - | - | - | - | - | - | - | - | - | - | - | - | hypothetical protein (ykrT) |
BS3839 | -4.472 | BH3228 | 1 | - | - | - | - | CAC0780 | 1 | - | - | - | - | tyrosyl-tRNA synthetase (tyrZ) |
BS2961 | -4.430 | - | - | lin1639 | 1 | SAV1729 | 1 | CAC0637 | 0 | L0359 | 0 | SP2100 | 0 | tyrosyl-tRNA synthetase (tyrS) |
BS1143 | -4.382 | BH2870 | 0 | lin2301 | 1 | SAV0996 | 0 | CAC0626 | 1 | L0358 | 1 | SP2229 | 0 | tryptophanyl-tRNA synthetase (trpS) |
BS0254 | -4.309 | - | - | - | - | - | - | - | - | - | - | - | - | hypothetical protein (yczA) |
BS0643 | -4.279 | BH0623 | 1 | lin1887 | 0 | SAV1064 | 0 | CAC1390 | 0 | L152487 | 0 | SP0053 | 0 | phosphoribosylaminoimidazole |
carboxylase I (purE) | ||||||||||||||
BS3026 | -4.270 | BH3281 | 1 | lin1769 | 1 | SAV1760 | 0 | CAC0646 | 1 | L0352 | 0 | SP0254 | 0 | leucyl-tRNA synthetase (leuS) |
BS2889 | -4.249 | BH3141 | 1 | lin1594 | 1 | SAV1683 | 1 | - | - | L0357 | 1 | SP1631 | 0 | threonyl-tRNA synthetase (thrS) |
BS1188 | -4.176 | BH1627 | 0 | lin1788 | 0 | SAV0359 | 2 | - | - | L0102 | 0 | SP1525 | 0 | cystathionine gamma-synthase (yjcI) |
BS1313 | -4.086 | BH1505 | 1 | - | - | - | - | - | - | L0117 | 0 | SP0931 | 0 | gamma-glutamyl kinase (proB) |
BS3269 | -3.989 | BH3481 | 0 | lin2514 | 1 | SAV0837 | 1 | CAC0984 | 1 | L121289 | 0 | SP0151 | 0 | ABC transporter (ATP-binding |
protein) (yusC) | ||||||||||||||
BS3900 | -3.884 | BH3232 | 0 | - | - | - | - | CAC2807 | 0 | - | - | - | - | endo-beta-1,3-1,4 glucanase (bglS) |
BS0038 | -3.883 | BH0053 | 0 | lin0216 | 0 | SAV0490 | 0 | CAC2991 | 1 | L0353 | 0 | SP0788 | 0 | methionyl-tRNA synthetase (metS) |
BS2858 | -3.784 | BH3111 | 1 | lin1184 | 0 | SAV1138 | 1 | CAC2357 | 1 | L0354 | 2 | SP0579 | 1 | phenylalanyl-tRNA synthethase |
(alpha subunit) (pheS) | ||||||||||||||
BS0927 | -3.776 | BH1092 | 1 | lin1574 | 1 | SAV1300 | 1 | CAC1319 | 1 | L0015 | 0 | SP2184 | 0 | glycerol uptake facilitator (glpF) |
BS1548 | -3.473 | BH2541 | 1 | lin1954 | 1 | SAV1198 | 1 | CAC2113 | 1 | L0227 | 1 | SP1278 | 1 | uracil phosphoribosyltransferase |
(pyrR) | ||||||||||||||
BS3888 | -3.412 | - | - | lin0838 | 2 | - | - | - | - | L124252 | 0 | - | - | hypothetical protein (yxjH) |
BS3889 | -3.412 | - | - | - | - | - | - | - | - | - | - | - | - | hypothetical protein (yxjG) |
BS1549 | -3.265 | BH2540 | 1 | lin1953 | 0 | SAV1199 | 2 | CAC2112 | 0 | L46118 | 0 | SP1286 | 0 | uracil permease (pyrP) |
BS1550 | -3.120 | BH2539 | 1 | lin1952 | 0 | SAV1200 | 0 | CAC2654 | 1 | L45002 | 0 | SP1277 | 0 | aspartate carbamoyltransferase |
(pyrB) | ||||||||||||||
BS1166 | -3.059 | BH2679 | 0 | lin0340 | 1 | SAV2094 | 1 | - | - | L0228 | 0 | SP0722 | 0 | transcriptional regulator (tenA) |
BS1360 | -2.966 | - | - | - | - | - | - | - | - | - | - | - | - | ribulose-bisphosphate carboxylase |
(ykrW) | ||||||||||||||
BS1855 | -2.649 | - | - | - | - | - | - | - | - | - | - | - | - | phosphoglycerate dehydrogenase |
(yoaD) | ||||||||||||||
BS2376 | -2.057 | BH1503 | 0 | lin0414 | 0 | SAV1503 | 0 | CAC3252 | 0 | L135991 | 0 | SP0933 | 0 | pyrroline-5-carboxylate reductase |
(yqjO) | ||||||||||||||