Table 2 Pattern discovery using ROMs (regions of overlapping matches) with maximal score to find binding sites in DNA
Regulatory protein | Number of genes in the regulon* | Touched by max† | Percent touched by max‡ | Touched by other§ | Total percent touched¶ | Not touched** | Without dyads†† |
|---|---|---|---|---|---|---|---|
ArgR | 6 | 2 | 33.33 | 4 | 100.00 | 0 | 0 |
CRP | 54 | 42 | 77.78 | 8 | 92.59 | 4 | 0 |
FNR | 17 | 10 | 58.82 | 0 | 58.82 | 2 | 5 |
GlpR | 4 | 3 | 75.00 | 1 | 100.00 | 0 | 0 |
IlvY | 2 | 2 | 100.00 | 0 | 100.00 | 0 | 0 |
LexA | 8 | 8 | 100.00 | 0 | 100.00 | 0 | 0 |
MalI | 2 | 2 | 100.00 | 0 | 100.00 | 0 | 0 |
MalT | 4 | 4 | 100.00 | 0 | 100.00 | 0 | 0 |
MelR | 2 | 2 | 100.00 | 0 | 100.00 | 0 | 0 |
NR_I | 3 | 3 | 100.00 | 0 | 100.00 | 0 | 0 |
NarL | 6 | 3 | 50.00 | 0 | 50.00 | 2 | 1 |
PhoB | 4 | 4 | 100.00 | 0 | 100.00 | 0 | 0 |
PurR | 12 | 11 | 91.67 | 0 | 91.67 | 1 | 0 |
TorR | 1 | 1 | 100.00 | 0 | 100.00 | 0 | 0 |
TrpR | 5 | 4 | 80.00 | 1 | 100.00 | 0 | 0 |
TyrR | 8 | 7 | 87.50 | 0 | 87.50 | 1 | 0 |