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Table 5 Benchmark misclassification rates

From: Supervised clustering of genes

Leukemia

q = 1

q = 2

q = 3

q = 5

q = 10

q = 15

q = 20

Nearest neighbor

6.33%

4.79%

4.50%

4.08%

3.67%

3.75%

3.79%

Aggregated trees

8.50%

6.04%

4.54%

3.92%

4.83%

6.79%

8.46%

Breast

q = 1

q = 2

q = 3

q = 5

q = 10

q = 15

q = 20

Nearest neighbor

1.08%

0.83%

0.92%

1.17%

1.33%

1.50%

1.58%

Aggregated trees

5.42%

2.50%

1.83%

2.42%

4.17%

5.42%

8.33%

Prostate

q = 1

q = 2

q = 3

q = 5

q = 10

q = 15

q = 20

Nearest neighbor

13.24%

10.68%

9.15%

8.44%

7.76%

8.18%

7.85%

Aggregated trees

25.47%

21.29%

18.56%

17.44%

16.65%

17.65%

18.94%

Colon

q = 1

q = 2

q = 3

q = 5

q = 10

q = 15

q = 20

Nearest neighbor

23.40%

21.95%

20.15%

18.90%

16.65%

16.25%

15.70%

Aggregated trees

30.95%

29.70%

30.20%

31.20%

33.55%

34.15%

34.90%

SRBCT

q = 1

q = 2

q = 3

q = 5

q = 10

q = 15

q = 20

Nearest neighbor

1.76%

0.86%

0.81%

1.05%

1.19%

1.43%

1.48%

Aggregated trees

4.38%

2.00%

2.62%

3.95%

6.48%

6.95%

8.43%

Lymphoma

q = 1

q = 2

q = 3

q = 5

q = 10

q = 15

q = 20

Nearest neighbor

2.43%

2.29%

1.76%

1.05%

0.81%

0.81%

0.86%

Aggregated trees

4.38%

2.81%

2.10%

1.00%

0.81%

1.05%

1.24%

Brain

q = 1

q = 2

q = 3

q = 5

q = 10

q = 15

q = 20

Nearest neighbor

30.79%

29.07%

29.50%

27.57%

28.50%

28.00%

27.50%

Aggregated trees

40.14%

35.29%

34.64%

33.50%

34.36%

34.79%

35.29%

NCI

q = 1

q = 2

q = 3

q = 5

q = 10

q = 15

q = 20

Nearest neighbor

39.63%

34.89%

32.84%

31.95%

30.68%

29.74%

28.95%

Aggregated trees

56.58%

49.53%

44.84%

42.42%

39.21%

39.05%

37.79%

  1. Benchmark misclassification rates for out-of-sample classification with the very same but non-averaged genes from q clusters as features, based on N = 100 random divisions into learning set (two thirds of the data) and test set (one third of the data).