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Table 3 B. malayi BAC end comparisons to C. elegans

From: Conservation of long-range synteny and microsynteny between the genomes of two distantly related nematodes

 

T7 end

SP6 end

 

Brugia malayi BAC clone

C. elegans match

C. elegans chromosome

Position on chromosome

Exponent of probability in BLAST search

C. elegans match

C. elegans chromosome

Position on chromosome

Exponent of probability in BLAST search

Distance between matches

BMBAC01M03

CE27661

IV

7844080

18

CE03144

II

11592445

30

NA

BMBAC01I11

CE12826

II

2125627

24

CE27131

X

12434210

12

NA

BMBAC01O12

CE12384

IV

11536217

21

CE24899

X

10540216

13

NA

BMBAC01I15

CE07931

X

1138520

11

CE00450

III

7926986

9

NA

BMBAC01F17

CE06551

V

11711418

18

CE00946

III

4668338

18

NA

BMBAC01F18

CE06551

V

11711418

18

CE00946

III

4668338

18

NA

BMBAC03I06

CE04396

X

4702371

12

CE01008

III

3436926

17

NA

BMBAC03F12

CE22809

IV

10961452

9

CE28366

V

2688438

15

NA

BMBAC03O15

CE29604

I

10151104

24

CE08947

V

11984722

10

NA

BMBAC03F17

CE00316

III

9821062

22

CE14390

V

6500809

8

NA

BMBAC03J17

CE20445

IV

3562754

23

CE15856

II

13201660

9

NA

BMBAC04M12

CE14750

I

4619453

9

CE17599

V

14520036

11

NA

BMBAC04B14

CE26776

IV

2800306

36

CE03447

X

10583738

36

NA

BMBAC04B18

CE01099

III

9303554

45

CE16711

V

18449410

43

NA

BMBAC06B01

CE15044

V

4304442

23

CE26600

I

1494247

10

NA

BMBAC07G03

CE07756

II

3032776

9

CE13435

I

6135032

20

NA

BMBAC08D11

CE22116

II

14151234

16

CE17662

I

9188977

19

NA

BMBAC08E17

CE18356

I

3663582

17

CE24671

X

1800708

13

NA

BMBAC09F11

CE08682

I

4162592

13

CE08947

V

11984722

10

NA

BMBAC09K18

CE26381

IV

7210081

26

CE27040

III

1491791

12

NA

BMBAC09A22

CE24671

X

1800708

38

CE14734

II

1143941

33

NA

BMBAC10N08

CE14734

II

1143941

29

CE11078

X

14666566

18

NA

BMBAC11P11

CE18826

I

12580986

63

CE01074

III

4761237

39

NA

BMBAC301H09

CE00436

III

8966904

15

CE03397

II

10033351

10

NA

BMBAC303G12

CE25661

X

10088725

12

CE28910

IV

12096051

37

NA

BMBAC305D10

CE05811

IV

12222786

10

CE26022

I

13790068

13

NA

BMBAC306C12

CE19038

II

12001566

10

CE17716

V

5828441

25

NA

BMBAC307F09

CE26106

III

11214188

14

CE24397

I

398952

12

NA

BMBAC308B07

CE01495

III

4243241

9

CE23997

I

4301621

52

NA

BMBAC308E07

CE10254

V

8596497

16

CE22541

IV

1058851

39

NA

BMBAC309G05

CE19946

V

13652193

10

CE20405

I

10121170

21

NA

BMBAC310G03

CE00169

III

8560276

16

CE03487

IV

11101538

20

NA

BMBAC310F07

CE26106

III

11214188

20

CE17565

I

12897554

9

NA

BMBAC311D10

CE05492

IV

9045220

11

CE09323

I

8357446

11

NA

BMBAC312B12

CE03263

X

12785597

11

CE20461

II

11358344

28

NA

BMBAC314G02

CE04726

X

7500571

15

CE16564

III

10779508

14

NA

BMBAC314G05

CE04726

X

7500571

15

CE16564

III

10779508

14

NA

BMBAC314C06

CE14448

V

8303220

13

CE25695

III

7697801

23

NA

BMBAC321E09

CE00901

III

3777196

28

CE04196

IV

7171873

27

NA

BMBAC324A05

CE23883

X

10640426

10

CE24718

IV

9708837

15

NA

BMBAC325E11

CE24076

IV

16170439

27

CE20681

III

3942090

19

NA

BMBAC327E05

CE29377

II

14249402

21

CE05190

I

7147729

9

NA

BMBAC328H12

CE11268

I

6056251

27

CE20346

IV

359584

33

NA

BMBAC331C11

CE00639

III

10524644

12

CE07306

V

8110632

39

NA

BMBAC332H10

CE03812

X

11374102

41

CE03398

II

10030927

18

NA

BMBAC335D03

CE00713

III

6820989

37

CE26022

I

13790068

10

NA

BMBAC335B06

CE03657

X

12880838

36

CE28110

II

12072195

15

NA

BMBAC335H06

CE04374

III

7093735

29

CE27906

II

7218339

12

NA

BMBAC335B11

CE28095

II

6474361

11

CE12664

IV

10627077

9

NA

BMBAC335G11

CE14211

II

526662

12

CE00644

III

4417152

9

NA

BMBAC338H04

CE21000

I

3609203

39

CE01643

II

8066397

57

NA

BMBAC340C01

CE08947

V

11984722

12

CE06100

I

7963691

10

NA

BMBAC340H10

CE24671

X

1800708

28

CE28961

II

8518425

11

NA

BMBAC341A06

CE24422

II

15153828

10

CE26560

IV

2637785

14

NA

BMBAC341H09

CE20297

I

10962692

19

CE07462

X

16821321

18

NA

BMBAC342D11

CE27040

III

1491791

14

CE11074

X

14645097

11

NA

BMBAC352C10

CE00713

III

6820989

44

CE26022

I

13790068

18

NA

BMBAC353A03

CE00949

III

4694946

10

CE06100

I

7963691

18

NA

BMBAC353E06

CE09682

IV

17269732

48

CE02716

II

4609014

10

NA

BMBAC354G08

CE24000

X

13899761

16

CE21401

I

12747957

34

NA

BMBAC354C09

CE16562

III

10808992

23

CE17579

IV

1178045

9

NA

BMBAC355C03

CE04838

IV

7225306

12

CE21023

I

2496034

24

NA

BMBAC356B08

CE06116

V

10355247

11

CE26971

I

311402

14

NA

BMBAC357C02

CE14754

I

4624187

24

CE19593

III

867498

12

NA

BMBAC360E07

CE06034

IV

11733052

15

CE02044

II

6736839

11

NA

BMBAC362E03

CE05492

IV

9045220

11

CE28001

III

6020770

16

NA

BMBAC365D07

CE15463

IV

12871709

16

CE01508

II

11384821

12

NA

BMBAC365F09

CE15612

V

10250527

10

CE05747

IV

12401915

20

NA

BMBAC365D11

CE15892

I

13091093

13

CE28340

III

13328281

9

NA

BMBAC368B08

CE21026

X

8125574

15

CE09880

I

8898846

16

NA

BMBAC374G02

CE24292

II

12681620

11

CE06704

IV

5987165

18

NA

BMBAC375H10

CE01537

II

9588260

15

CE04726

X

7500571

15

NA

BMBAC376D04

CE02705

II

5918674

9

CE29504

IV

4212960

17

NA

BMBAC377D05

CE03061

X

12966730

14

CE15044

V

4304442

10

NA

BMBAC01G04

CE12942

II

163142

12

CE15754

II

13443071

19

13279929

BMBAC01J11

CE17559

III

3729721

13

CE27691

III

6439903

14

2710182

BMBAC01N16

CE19942

II

6157856

20

CE01090

II

7858336

15

1700480

BMBAC01A23

CE27862

I

4952222

8

CE16340

I

13239686

8

8287464

BMBAC01M24

CE02307

II

10222779

15

CE04813

II

4902586

25

5320193

BMBAC02F03

CE01008

III

3436926

30

CE02018

III

5268852

17

1831926

BMBAC02M10

CE18369

IV

14965985

26

CE27782

IV

32953

13

14933032

BMBAC03D10

CE01563

II

10146750

11

CE18563

II

14006392

10

3859642

BMBAC03L15

CE27488

IV

2976034

13

CE20122

IV

12679870

30

9703836

BMBAC03O17

CE27311

III

1616853

13

CE00946

III

4668338

20

3051485

BMBAC03J24

CE21971

II

12727192

17

CE22157

II

13670692

12

943500

BMBAC04P08

CE17474

IV

8034836

13

CE06702

IV

5987165

37

2047671

BMBAC04J10

CE17474

IV

8034836

12

CE06702

IV

5987165

35

2047671

BMBAC04G15

CE03492

III

10465212

14

CE01161

III

5016428

29

5448784

BMBAC04L18

CE26381

IV

7210081

23

CE06302

IV

10375062

23

3164981

BMBAC06H01

CE16413

V

11222884

11

CE08630

V

4818967

13

6403917

BMBAC07C02

CE13736

I

5616992

9

CE18454

I

7384257

27

1767265

BMBAC07C06

CE28324

X

4830732

21

CE23711

X

14708595

24

9877863

BMBAC07E21

CE16194

III

10818631

33

CE26632

III

12724299

46

1905668

BMBAC07C22

CE16565

III

10784128

12

CE17401

III

3778796

16

7005332

BMBAC08P03

CE27215

X

6626852

21

CE09403

X

4445872

16

2180980

BMBAC09E01

CE25011

III

7031238

12

CE24009

III

4722390

10

2308848

BMBAC09B17

CE25196

II

2913916

15

CE18730

II

11578670

11

8664754

BMBAC09E19

CE22045

III

11317051

12

CE20681

III

3942090

23

7374961

BMBAC09J20

CE27601

IV

3694675

13

CE17308

IV

3625656

9

69019

BMBAC09A24

CE04504

IV

8315582

37

CE29005

IV

6345808

12

1969774

BMBAC10M23

CE01473

II

8023190

13

CE28454

II

5867637

17

2155553

BMBAC11H08

CE11494

II

10872814

20

CE03412

II

11545610

17

672796

BMBAC11K08

CE28485

IV

16845895

21

CE06705

IV

5987165

45

10858730

BMBAC11C09

CE21401

I

12747957

12

CE08532

I

3704246

13

9043711

BMBAC11H20

CE08377

I

10117043

20

CE17566

I

12903800

16

2786757

BMBAC13A23

CE29235

II

6995861

10

CE23659

II

13251947

19

6256086

BMBAC301F09

CE28770

V

7400098

9

CE06116

V

10355247

13

2955149

BMBAC303H10

CE18123

X

10768551

12

CE04392

X

5627431

15

5141120

BMBAC303E12

CE01105

III

3992607

28

CE05066

III

6081444

39

2088837

BMBAC306B02

CE19437

IV

1935178

12

CE06634

IV

11985224

30

10050046

BMBAC306F02

CE21208

V

11417176

9

CE15044

V

4304442

46

7112734

BMBAC306B09

CE05594

IV

11574005

10

CE18268

IV

262009

12

11311996

BMBAC309A07

CE27186

II

1490131

20

CE20311

II

14794131

18

13304000

BMBAC309H07

CE15235

I

6586100

12

CE15751

I

8715988

13

2129888

BMBAC311C01

CE26713

X

10830672

11

CE05839

X

14719098

16

3888426

BMBAC312B02

CE23530

II

9886945

21

CE05732

II

9892692

9

5747

BMBAC318E08

CE03335

II

9006072

32

CE01731

II

10094778

33

1088706

BMBAC320B05

CE24687

I

13505250

32

CE10608

I

5535918

18

7969332

BMBAC321D05

CE03487

IV

11101538

12

CE06601

IV

12361570

12

1260032

BMBAC323H11

CE28173

II

7045967

12

CE03349

II

8811285

12

1765318

BMBAC326G05

CE18454

I

7384257

16

CE19979

I

14650506

17

7266249

BMBAC327F03

CE05372

I

8656418

20

CE17767

I

14934285

15

6277867

BMBAC327E08

CE22135

II

13280025

18

CE03397

II

10033351

14

3246674

BMBAC329E10

CE26424

III

7268168

10

CE26172

III

2584463

13

4683705

BMBAC333B09

CE06291

III

9853062

21

CE00018

III

9542362

18

310700

BMBAC335G07

CE23108

V

18907704

25

CE08145

V

7207535

24

11700169

BMBAC336F09

CE23823

V

904798

12

CE08939

V

10165831

10

9261033

BMBAC338B09

CE19930

IV

11494578

12

CE27358

IV

12787708

12

1293130

BMBAC339A05

CE03536

X

11156821

19

CE29169

X

15581083

10

4424262

BMBAC340B12

CE28433

V

12591291

11

CE06114

V

10352190

21

2239101

BMBAC341B01

CE06362

IV

11131027

28

CE17284

IV

507058

10

10623969

BMBAC344B10

CE27691

III

6439903

9

CE18868

III

13830997

16

7391094

BMBAC345G11

CE16052

III

13507164

17

CE01319

III

7408460

22

6098704

BMBAC346C07

CE20899

III

9066807

42

CE06204

III

10983239

9

1916432

BMBAC348D09

CE27859

X

4671617

13

CE03447

X

10583738

14

5912121

BMBAC349D02

CE28454

II

5867637

30

CE01473

II

8023190

15

2155553

BMBAC349A03

CE01694

II

9647841

22

CE01697

II

9649394

30

1553

BMBAC350E01

CE05839

X

14719098

31

CE28227

X

10830175

11

3888923

BMBAC350F06

CE07421

IV

7521267

17

CE17427

IV

606450

11

6914817

BMBAC351D02

CE17559

III

3729721

37

CE29455

III

7295192

14

3565471

BMBAC351E11

CE04813

II

4902586

15

CE01843

II

6318128

9

1415542

BMBAC352A02

CE16057

X

9835707

16

CE23711

X

14708595

13

4872888

BMBAC352H11

CE27011

III

2386289

22

CE23035

III

12323434

40

9937145

BMBAC354D02

CE09506

V

13767614

15

CE26193

V

7064763

11

6702851

BMBAC354C06

CE28000

V

5680455

19

CE18785

V

14010680

10

8330225

BMBAC357F01

CE07705

I

5160615

15

CE17689

I

7197186

12

2036571

BMBAC357D06

CE05481

V

9909478

10

CE18731

V

12911699

11

3002221

BMBAC360G09

CE26686

V

19889249

20

CE12204

V

12228547

13

7660702

BMBAC361F02

CE21971

II

12727192

15

CE24422

II

15153828

14

2426636

BMBAC364D04

CE19878

IV

13020730

47

CE12664

IV

10627077

24

2393653

BMBAC364D12

CE05066

III

6081444

36

CE01648

III

10372177

11

4290733

BMBAC365G04

CE27551

I

1567610

19

CE09340

I

9956916

15

8389306

BMBAC367E09

CE29511

III

7551909

19

CE28049

III

10232451

11

2680542

BMBAC369F08

CE20121

IV

12674275

12

CE06362

IV

11131027

44

1543248

BMBAC370D08

CE09762

IV

3867451

19

CE17122

IV

7994133

17

4126682

BMBAC372C01

CE06239

I

8521548

15

CE16055

I

10289506

13

1767958

BMBAC372A05

CE23035

III

12323434

18

CE27402

III

5842056

15

6481378

BMBAC372F06

CE29472

III

5231760

15

CE00100

III

8521627

9

3289867

BMBAC372A09

CE00872

III

4156692

10

CE20934

III

3133584

18

1023108

BMBAC373F04

CE09880

I

8898846

12

CE06511

I

7477616

19

1421230

BMBAC374E02

CE00946

III

4668338

10

CE03076

III

3936413

20

731925

BMBAC374F12

CE21847

IV

1757609

21

CE06364

IV

11128632

11

9371023

BMBAC375A04

CE25585

IV

6754827

12

CE04562

IV

7326282

11

571455

BMBAC375F12

CE22210

V

14353297

17

CE21224

V

7077544

16

7275753

  1. Clones with significant matches at both ends. NA, not applicable.