Table 5 Prototype repeat sequences (Arabidopsis thaliana genome) that matched genes or annotated AtRepBase repeats

1

30,975

Hypothetical protein

ATR0081 minisatellite 1 from 63767 to 63826

12639

202

AC002534 ATR0058

56

164

Hypothetical protein

42

135

ATR0087

284

135

Pseudogene

6

133

Hypothetical protein

20

111

Putative O-methyltransferase 1

54

111

Putative reverse transcriptase

62

107

Hypothetical protein

95

85

Hypothetical protein

1389

85

Putative receptor kinase

269

81

Putative receptor kinase

58

78

Putative retroelement pol polyprotein

236

71

Putative disease resistance protein

18068

67

Putative Ser/Thr kinase

5

64

Pseudogene

29

64

Hypothetical protein

400

57

Hypothetical protein

12310

56

Hypothetical protein

U65470 ATR0043

187

55

Hypothetical protein

38

50

Putative NBS/LRR disease resistance protein

47

48

Putative phenylalanine ammonia-lyase

104

46

M65137 ATR0025

345

45

Pseudogene

12594

45

Putative reverse transcriptase

735

45

Hypothetical protein

240

43

Putative disease-resistance protein

167

42

Pseudogene

60

41

Hypothetical protein

211

41

81

39

Hypothetical protein

124

38

Hypothetical protein

411

38

Putative disease-resistance protein

324

37

X93607 ATR0046

170

37

ATR0084 repeat 5 from 102144 to 105991

421

37

AF024504 ATR0056

293

36

Hypothetical protein

repeat01 ATR0090

357

35

Pseudogene

426

34

CHP-rich zinc finger protein-like

22466

32

Hypothetical protein

64

32

Hypothetical protein

242

32

Hypothetical protein

249

31

Putative cytochrome P450

18597

31

Putative transposon protein

256

31

Putative serine carboxypeptidase

202

30

Hypothetical protein

290

30

Pseudogene

18166

29

Putative CHP-rich zinc finger protein

12400

29

Hypothetical protein

297

29

Mutator-like transposase

ATR0089