Skip to main content

Table 3 Partial homologies with known genes

From: Isolation, in silico characterization and chromosomal localization of a group of cDNAs from ciliated epithelial cells after in vitro ciliogenesis

Clone Homology with Homologous Homology with Chromo- Homologous In between Distance
names normal database region, extent human clone some region, extent marker from
  (identity), of similarity (HTGS),   of similarity   P-tel
  accession (bp)*, identity accession   (bp)*, identity   (kb)
  number (bp/bp) number   (bp/bp)   
24-17, 389 bp AL137022 Histone 125-145, 21/21 NSH NA NA NA NA
  (H3) pseudogene       
24-4, 323 bp AF078904 Zeta 84-105 bp, 22/22 AC058816 6 1-135,121/122 stSN21216 and 7798
  globin gene      D6S1442  
26-1, 138 bp AE003672 Dm genome 56-78, 22/23 AC022237 15 1-20, 20/20 NMF NA
  scaffold binding protein       
3R1-2f, 429 bp AE001826 Dr R1 6-32, 26/27 NSH NA NA NA NA
  megaplasmid MP1       
36-5, 225 bp NM_002888.1Hs 52-190, 136/139 AC025033 3 51-190,137/140 stSG53537 and 197037
  retinoic acid receptor      R95445  
  responder       
36-50, 104 bp NM_014666.1| Hs 32-84, 48/53 AC026407 5 32-84, 48/53 D5S1853 and 123950
  KIAA0171 gene product      RH101108  
36-98, 195 bp AF068299 170-193, 24/25 AC069530 3 164-182 19/19 NMF NA
  A. thaliana gamma       
  glutamylcysteine       
  synthetase gene       
3R1-32, 182 bp AE003819 Dm 102-121, 20/20 NSH NA NA NA NA
  genomic scaffold       
5R29, 506 bp AE003568 Dm 465-491,26/27 NSH NA NA NA NA
  genomic scaffold       
5R5, 83 bp AE003650 Dm 22-42, 21/21 AC027364 6 19-66, 48/48 RH112849 & 6789
  genomic scaffold      stSG47852  
    AC024731 11 21-117, 90/97 NMF NA
9010, 440 bp AF218906.1 Hs 215-408,192/194 AC015847 17 215-408,192/194 NMF NA
  attractin precursor       
  (ATRN)       
9014, 396 bp AF095856 Hs 373-394, 22/22 AL133245.2 2 109-358,247/250 stSG60109 and 36134
  asthmatic clone 4 mRNA      RH120618  
    AC010968 2 109-358,247/250 stSG22421 and 30222
       RH120618  
905, 485 bp X73004.1Hs EWS gene 173-415,237/239 AF121897 21 176-415,238/240 NMF NA
906, 130 bp AF144028.1Hs 19-72, 54/54 AC019009 14 19-67, 49/49 NMF NA
  MDM2 gene       
    AC022305 15 19-67, 49/49 NMF NA
907, 391 bp AB026436 Hs for 12-64, 52/53 AL049696.9 6 92-371,279/280 D6S1762 and 88638
  dual specificity      D6S1856  
  phosphatase MKP5       
9640, 271 bp AB024935 Mus 106-200, 89/96 AC073620 12 13-249, 237/237 RH44840 and 9861
  musculus Sid3177 mRNA      RH83752  
9646, 249 bp NM_014928.1 Hs 17-124, 107/108 AC006207 12 17-235, 216/219 B568G1/T7 and 1911
  KIAA1046 protein      D12S2049  
9667, 262 bp AF119664 Hs 130-216, 86/87 AC019214 17 1-179, 177/179 D17S609 and 87186
  Transcriptional regulator      D17S1769  
  protein HCNGP mRNA       
c2s-3, 348 bp AF207550 Hs 49-86, 34/38 AC019099 Y 4-286, 252/254 DYS215 and 21795
  protein translocase      DYS197  
  1. *Extent of similarity, the starting and ending base pair in the respective homologous gene with the EST. †Identity, the number corresponds to the identical base pair of EST/homologous gene. number of base pair identical in EST with homologous gene. NA, not applicable. Hs, Homo sapiens; Dm, Drosophila melanogaster; Dr, Drosophila radiodurans. NSH, no significant homology (identity less than 20 bases); NMF, no matches found.