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Table 3 Partial homologies with known genes

From: Isolation, in silico characterization and chromosomal localization of a group of cDNAs from ciliated epithelial cells after in vitro ciliogenesis

Clone

Homology with

Homologous

Homology with

Chromo-

Homologous

In between

Distance

names

normal database

region, extent

human clone

some

region, extent

marker

from

 

(identity),

of similarity

(HTGS),

 

of similarity

 

P-tel

 

accession

(bp)*, identity

accession

 

(bp)*, identity

 

(kb)

 

number

(bp/bp)†

number

 

(bp/bp)†

  

24-17, 389 bp

AL137022 Histone

125-145, 21/21

NSH

NA

NA

NA

NA

 

(H3) pseudogene

      

24-4, 323 bp

AF078904 Zeta

84-105 bp, 22/22

AC058816

6

1-135,121/122

stSN21216 and

7798

 

globin gene

    

D6S1442

 

26-1, 138 bp

AE003672 Dm genome

56-78, 22/23

AC022237

15

1-20, 20/20

NMF

NA

 

scaffold binding protein

      

3R1-2f, 429 bp

AE001826 Dr R1

6-32, 26/27

NSH

NA

NA

NA

NA

 

megaplasmid MP1

      

36-5, 225 bp

NM_002888.1Hs

52-190, 136/139

AC025033

3

51-190,137/140

stSG53537 and

197037

 

retinoic acid receptor

    

R95445

 
 

responder

      

36-50, 104 bp

NM_014666.1| Hs

32-84, 48/53

AC026407

5

32-84, 48/53

D5S1853 and

123950

 

KIAA0171 gene product

    

RH101108

 

36-98, 195 bp

AF068299

170-193, 24/25

AC069530

3

164-182 19/19

NMF

NA

 

A. thaliana gamma

      
 

glutamylcysteine

      
 

synthetase gene

      

3R1-32, 182 bp

AE003819 Dm

102-121, 20/20

NSH

NA

NA

NA

NA

 

genomic scaffold

      

5R29, 506 bp

AE003568 Dm

465-491,26/27

NSH

NA

NA

NA

NA

 

genomic scaffold

      

5R5, 83 bp

AE003650 Dm

22-42, 21/21

AC027364

6

19-66, 48/48

RH112849 &

6789

 

genomic scaffold

    

stSG47852

 
   

AC024731

11

21-117, 90/97

NMF

NA

9010, 440 bp

AF218906.1 Hs

215-408,192/194

AC015847

17

215-408,192/194

NMF

NA

 

attractin precursor

      
 

(ATRN)

      

9014, 396 bp

AF095856 Hs

373-394, 22/22

AL133245.2

2

109-358,247/250

stSG60109 and

36134

 

asthmatic clone 4 mRNA

    

RH120618

 
   

AC010968

2

109-358,247/250

stSG22421 and

30222

      

RH120618

 

905, 485 bp

X73004.1Hs EWS gene

173-415,237/239

AF121897

21

176-415,238/240

NMF

NA

906, 130 bp

AF144028.1Hs

19-72, 54/54

AC019009

14

19-67, 49/49

NMF

NA

 

MDM2 gene

      
   

AC022305

15

19-67, 49/49

NMF

NA

907, 391 bp

AB026436 Hs for

12-64, 52/53

AL049696.9

6

92-371,279/280

D6S1762 and

88638

 

dual specificity

    

D6S1856

 
 

phosphatase MKP5

      

9640, 271 bp

AB024935 Mus

106-200, 89/96

AC073620

12

13-249, 237/237

RH44840 and

9861

 

musculus Sid3177 mRNA

    

RH83752

 

9646, 249 bp

NM_014928.1 Hs

17-124, 107/108

AC006207

12

17-235, 216/219

B568G1/T7 and

1911

 

KIAA1046 protein

    

D12S2049

 

9667, 262 bp

AF119664 Hs

130-216, 86/87

AC019214

17

1-179, 177/179

D17S609 and

87186

 

Transcriptional regulator

    

D17S1769

 
 

protein HCNGP mRNA

      

c2s-3, 348 bp

AF207550 Hs

49-86, 34/38

AC019099

Y

4-286, 252/254

DYS215 and

21795

 

protein translocase

    

DYS197

 
  1. *Extent of similarity, the starting and ending base pair in the respective homologous gene with the EST. †Identity, the number corresponds to the identical base pair of EST/homologous gene. number of base pair identical in EST with homologous gene. NA, not applicable. Hs, Homo sapiens; Dm, Drosophila melanogaster; Dr, Drosophila radiodurans. NSH, no significant homology (identity less than 20 bases); NMF, no matches found.
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