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Table 1 Assignment of proteins to COGs

From: Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)

Category A. pernix P. abyssi
Proteins assigned by COGNITOR 1,123 1,421
Proteins included in COGs* 1,102 1,404
True positives 1,062 1,381
   Pre-existing COGs 1,011 1,339
   New COGs 27 3
   Divided 24 39
False positives 44 31
   Not accepted 21 17
   Reassigned to a related COG 21 14
   Reassigned to an unrelated COG 2 0
False negatives 17 9
  1. *Includes true positives, reassigned false positives, and false negatives. Not included in 'To preexisting COG' or 'To new COG' numbers. Proteins added during manual checking.