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Table 1 Number of genes containing insertion of TEs from different families

From: A computational approach to identify transposable element insertions in cancer cells

Class/Family HCC1954BL (N) HCC1954 (T)
DNA 4 3
DNA/MuDR 5 1
DNA/PiggyBac 2 2
DNA/TcMar-Mariner 10 9
DNA/TcMar-Tc2 6 8
DNA/TcMar-Tigger 90 96
DNA/hAT 2 8
DNA/hAT-Blackjack 7 19
DNA/hAT-Charlie 107 137
DNA/hAT-Tip100 12 19
LINE/CR1 23 25
LINE/Dong-R4 1 1
LINE/L1 863 641
LINE/L2 163 175
LINE/RTE 9 13
LINE/RTE-BovB 1 0
LTR 1 2
LTR/ERV1 134 145
LTR/ERVK 11 17
LTR/ERVL 70 77
LTR/ERVL-MaLR 148 186
LTR/Gypsy 6 7
Other 5 4
RNA 1 3
SINE 6 17
SINE/Alu 264 406
SINE/Deu 5 14
SINE/MIR 109 145
SINE/tRNA 0 3
Satellite 7 15
Satellite/acro 2 1
Satellite/centr 52 112
Unknown 6 8
rRNA 14 11
scRNA 4 2
snRNA 0 2
srpRNA 4 1
tRNA 0 1
Total 2.154 2.340