Fig. 2
From: SPUMONI 2: improved classification using a pangenome index of minimizer digests
a Shows the relative size of the minimizer-based SPUMONI indexes across a range of large window sizes compared to the index size when indexing the full FASTA file. The dataset indexed is a set of 500 Escherichia coli genomes, and the small window size was kept at 4. b Shows the speed-up achieved when using the minimizer-based indexes to query 1 million short E. coli reads [18] against our index compared to querying against an index over the full FASTA file