From: SeATAC: a tool for exploring the chromatin landscape and the role of pioneer factors
Name | Tasks | Description | RNA-seq | ATAC-seq | # cond | Refs |
---|---|---|---|---|---|---|
Ascl1 | 4,6 | Ascl-1-induced mouse neural reprogramming | GSE43916 | GSE101397 | 4 | |
Duren | 1,2,3,4 | Retinoic acid (RA)-induced mESC differentiation | GSE136312 | GSE136312 | 6 | |
Perrin | 1,2,3,4 | Human adipocyte differentiation | GSE178795 | GSE178794 | 5 | |
Ramirez (macrophage, monocyte derived, monocyte) | 1,2,3,4 | Human myeloid differentiation | GSE79044 | GSE79019 | 30 | |
Liu | 1,2,3,4 | Human cardiac differentiation | GSE85331 | GSE85330 | 16 | |
Markov | 1,2,3,4 | Human early iPSC reprogramming | GSE121052 | GSE120992 | 10 | |
Schwarz | 1,2,3,4 | Human iPSC reprogramming | GSE106836 | GSE106834 | 7 | |
Liu2 | 1,2,3,4 | Human-induced trophoblast stem cell reprogramming | GSE150616 | GSE150590 | 3 | |
Melendez | 1,2,3,4 | Human dopaminergic neuron differentiation | GSE153005 | GSE153005 | 4 | |
Benchetrit | 1,2,3,4 | Mouse blastocyst cell reprogramming | GSE98124 | GSE98124 | 7 | |
Wu | 1,2,3,4 | Human somatic cell reprogramming | GSE147679 | GSE147678 | 11 | |
Yagi | 1,2,3,4 | Mouse nature myocytes and myogenic stem cell trans-differentiation | GSE169488 | GSE169488 | 15 | |
Knaupp | 1,2,3,4 | Human iPSC reprogramming | GSE101905 | GSE101905 | 9 | |
Li | 1,2,3,4,6 | Mouse iPSC reprogramming | GSE93027 | GSE93026 | 14 | |
Zenere | 1,2,3,4 | T-help type 1 (Th1) differentiation | E-MTAB-7775 E-MTAB-10423 | E-MTAB-10444 | 13 | |
Maza | 1,2,3 | Somatic cell trans-differentiation | Â | GSE67298 | 4 | |
Qu | 1,2,3 | Primary human T cells | Â | GSE60682 | 29 | |
Denny | 1,2,3 | Primary tumors and metastases | Â | GSE81255 | 31 | |
Zviran | 1,2,3 | Somatic cell reprogramming | Â | GSE103821 | 16 | |
Corces | 1,2,3 | Hematopoietic and leukemic cells | Â | GSE74912 | 130 | |
GM12878 | 5 | Human LCL (GM12878) | Â | GSE47753 | 1 | |
Tang | 1,2,3 | MCF-7 cells with retinoic acid and/or TGF-beta | Â | GSE152749 | 4 | |
K562 | 5 | Human K562 cells | Â | GSE170378 | 1 | |
Etv2 | 5,6 | Etv2-induced reprogramming and differentiation | Â | GSE168636 | 17 | |
Buenrostro | Â | Human hematopoietic differentiation | Â | GSE96771 | 13 |