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Fig. 4 | Genome Biology

Fig. 4

From: Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data

Fig. 4

Results obtained for the anterior part of the mouse brain (coronal section). OLG, oligodendrocytes; OEG, olfactory ensheathing glia; ASC, astrocytes; GABA, GABAergic neurons; GLUT, glutamatergic neurons; DI-M, di-mesencephalon neurons; CPC, choroid plexus epithelial cells; EC, endothelial cells; MG, microglia; VLMC, vascular and leptomeningeal cells; CHOL, cholinergic neurons; PEPTI, peptidergic cells; DT, dummy type. A Heatmaps represent spatial composition for selected cell types. Dark violet indicates the absence of the cell type in question, yellow signalizes moderate occurrence, and magenta dominance of a given type. B Moran's I coefficient for cell types. C The correlation matrix heatmap represents the values of the Pearson correlation coefficient for all studied cell types, the positive values in red, negative in blue. 0 indicates that there is no relationship between studied variables. “X” denotes an insignificant correlation (p-values of the test with the test statistics based on Pearson’s product moment correlation coefficient \(p \le 0.05\))

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