Fig. 4
The evolutionary relationship of the haplotypes for Peduncle length (PL) locus (chromosome 1A:45,791,400-49,094,709). a Haplotype networks for PL locus. The haplotype networks were developed based on the SNPs in high linkage disequilibrium in a haplotype using the 306 hexaploid wheat accessions, and 126 additional accessions (30 Aegilops tauschii, 96 tetraploid wheat varieties). b Introgression from donor populations across PL locus (1A:45,791,400-49,094,709). Mean of fd was calculated on PL locus using Indian Dwarf Wheat as P1, Mengxian201 as P2, Rye as outgroup in four-taxon topology ((P1, P2), P3, O). c Haplotype blocks on PL locus with candidate introgression donors of Mengxian201. d The window based fd value on PL locus when B016 is used as P3, the window is set with 100 SNPs, with stepsize of 5 SNPs calculated using the python script available at https://github.com/simonhmartin/genomics_general