Skip to main content

Table 2 The top 10 selection signals in the Tibetan genome

From: Large-scale genome sequencing redefines the genetic footprints of high-altitude adaptation in Tibetans

CHR

POS (v.37)

SNVs

Genotype

TEA

Gene

CMS score

FST

Frequency of TEA

TBN

CHB

JPT

CEU

YRI

2

46,589,032

rs74898705

C > T

T

EPAS1

17.86

0.68

0.80

0.01

0.00

0.03

0.16

1

231,557,623

rs186996510

G > C

C

EGLN1

15.63

0.53

0.70

0.03

0.05

0.00

0.00

6

32,629,955

rs1063321

C > T

T

HLA_DQB1

13.26

0.27

0.82

0.46

0.52

0.39

0.29

12

129,084,774

rs7486929

A > G

A

TMEM132C

12.71

0.29

0.90

0.60

0.56

0.52

0.57

3

194,151,467

rs79377418

C > A

A

ATP13A3

11.72

0.13

0.32

0.00

0.02

0.11

0.10

22

41,627,775

rs5751069

G > C

C

L3MBTL2

11.6

0.29

0.91

0.61

0.78

0.66

0.45

2

61,330,217

rs1729672

A > G

A

SANBR

11.33

0.30

0.94

0.68

0.71

0.72

0.88

20

753,310

rs6117562

A > G

G

SLC52A3

11.14

0.47

0.97

0.64

0.58

0.77

0.67

6

62,431,522

rs12208789

A > G

A

KHDRBS2

10.7

0.42

0.91

0.51

0.50

0.57

0.81

12

120,434,838

rs11064986

C > T

T

BICDL1

10.7

0.27

0.83

0.47

0.46

0.81

0.47

  1. The four newly identified TSNGs are highlighted in bold
  2. TEA Tibetan-enriched allele, CHR Chromosome, POS (v.37) Physical position of GRCh37