Fig. 3

Differentiation trajectories of root hair, epidermis/cortex, and endodermis. a,b Differentiated trajectories of root hair and epidermis/cortex (a), epidermis/cortex and endodermis (b). Colors of dots are corresponding to cell clusters. The corresponding pseudo-time trajectory was shown on the right. c,d Branch heatmaps showing the expression of regulatory genes over the pseudo-time differentiation trajectories for root hair and epidermis/cortex (c), epidermis/cortex and endodermis (d). The pre-branch point is the beginning of pseudo-time. The annotated homologs of representative branch-dependent genes were shown on the right side of the branch heatmaps. Color bar indicates the relative expression level