Fig. 2
From: Identification of cell barcodes from long-read single-cell RNA-seq with BLAZE
Comparison of cell clusters identified with BLAZE, Cell Ranger, and Sockeye barcodes. Isoform expression UMAP plots from PromethION data. Isoform counts were generated with FLAMES using barcode whitelists from either Cell Ranger, BLAZE, or Sockeye. A Cells in all three plots are colored based on clustering with the Cell Ranger whitelist. Cells not found in the Cell Ranger whitelist are colored in gray. B Cells colored based on UMI counts (sum of all unique UMIs across all transcripts) per cell. C Cells that are empty droplets colored in blue. D Sockeye UMAP colored based on edit distance ≤ 2 or empty droplet