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Fig. 3 | Genome Biology

Fig. 3

From: A role for heritable transcriptomic variation in maize adaptation to temperate environments

Fig. 3

Independent component analysis identified co-expression modules related to important growth and stress response related pathways. a The correlation between heritability of independent components and the number of their associated co-expression gene modules. IC39, IC79 and IC101 and the function of the co-expression gene modules enriched were labeled under the independent component IDs. The correlation coefficient ((R)) and p-value ((P)) are shown on the top. b Genome wide association study (GWAS) of IC39 (top panel) and three candidate genes (pco092896 (Zm00001d047755), apx1 (Zm00001d047757), and mpk1 (Zm00001d047758)) identified within the regions exhibiting significant signals on chromosome 9 (bottom panel). c Genome wide association study (GWAS) of IC79 (top panel) and one candidate gene (cia2 (Zm00001d014664)) identified within the regions exhibiting significant signals on chromosome 5 (bottom panel). d Genome wide association study (GWAS) of IC101 (top panel) and one candidate gene (pco148714 (Zm00001d042533)) identified within the regions exhibiting significant signals on chromosome 5 (bottom panel). In b, c, and d, the lead SNPs are highlighted and the dashed horizontal lines indicate the p-value threshold

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