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Fig. 2 | Genome Biology

Fig. 2

From: A translatome-transcriptome multi-omics gene regulatory network reveals the complicated functional landscape of maize

Fig. 2

Genome-wide regulatory landscape of maize. A Construction of GRNs from two different data sources in maize. A mean GRN was constructed from the transcriptome and translatome of 21 tissues based on the mean expression levels from two biological replicates. A bulked GRN was constructed from the transcriptome and translatome of bulked samples from 20 tissues using the same methods, each bulked sample from three independent biological replicates. B Classification of different types of intra- and inter-omics GRNs. mmGRN and TTGRN represent intra-omics GRNs at the transcriptome and translatome levels, respectively, while TmGRN represents an inter-omics GRN between the translatome (TF) and transcriptome (Target). C Union GRN created by merging all GRNs (top 1 million edges), including both mean and bulked GRNs. D High-confidence network was generated by overlapping GRNs at network type level firstly (TT, TM, MM) and then merging the overlapped GRNs from different data sources (mean and bulked)

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