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Fig. 6 | Genome Biology

Fig. 6

From: Conservation and divergence of canonical and non-canonical imprinting in murids

Fig. 6

X chromosome inactivation (XCI) in rat and mouse. a Rat and mouse genome browser screenshots of the Xist locus. Refseq genes and CGIs are included. CUT&Run (rat) and ChIP-seq (mouse) data are shown in counts per million (CPM). Xist is highlighted in green. b Violin plots showing the distribution of paternal expression ratios of autosomal (top) and X chromosome (bottom) transcripts in rat and mouse epiblast and EPC samples. Replicate 1 of mouse cross “CJ” was omitted due to an XO genotype. Differences in XCI skewing between CJ and JC samples (bottom right) are likely due to differences in genome quality between the parental strains, with reads preferentially aligning to the reference “C” genome

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