From: Truvari: refined structural variant comparison preserves allelic diversity
Merge | TP | FP | FN | Precision | Recall | f1 | Call cnt | gt_concordance | HWE < 0.05 | ExcHet < 0.05 |
---|---|---|---|---|---|---|---|---|---|---|
BCFtools | 201 | 5 | 15 | 0.976 | 0.931 | 0.953 | 206 | 0.950 | 39 | 1 |
Truvari | 200 | 5 | 16 | 0.976 | 0.926 | 0.950 | 205 | 0.950 | 17 | 4 |
Jasmine | 196 | 10 | 20 | 0.951 | 0.907 | 0.929 | 206 | 0.949 | 17 | 4 |
Naive | 171 | 22 | 45 | 0.886 | 0.792 | 0.836 | 193 | 0.947 | 26 | 18 |
SURVIVOR | 160 | 28 | 56 | 0.851 | 0.741 | 0.792 | 188 | 0.956 | 24 | 20 |