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Fig. 3 | Genome Biology

Fig. 3

From: Canalization of genome-wide transcriptional activity in Arabidopsis thaliana accessions by MET1-dependent CG methylation

Fig. 3

Reduced CG methylation and increased chromatin accessibility in met1 mutants. a, b UMAP representation and heatmap of CG methylation levels in wild-type plants and met1 mutants across 749 CG-DMRs (from a total of 2388 CG-DMRs). c UMAP representation of chromatin accessibility in log2(CPM) of 9505 highly variable dACRs (HV-dACRs) across wild-type plants and met1 mutants. d Heatmap of z-scaled values of 9505 HV-dACRs grouped by k-means clustering, with mean accessibility for each dACR indicated on the right. TMM, trimmed mean of M-values. CPM, counts per million

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