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Fig. 5 | Genome Biology

Fig. 5

From: Parallel single-cell and bulk transcriptome analyses reveal key features of the gastric tumor microenvironment

Fig. 5

Immunosuppresive T cell dynamics in gastric cancer. A,B UMAP of 12,537 CD4+ T cells (A) and 28,772 CD8+ T cells (B) color coded for cluster annotation. C Pairwise analysis of T cell cluster fraction per patient in normal and tumor tissue, showing the most up- and downregulated T cells. Paired Wilcoxon rank-sum test, Holm-adjusted p-values per cluster shown. D Average expression of T cell implicated gene cluster U4 visualized on CD4+ T cell UMAP (Additional file 1: Fig. S3). E Heatmap of genes from gene cluster U4, color as scaled average expression

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