Skip to main content
Fig. 5 | Genome Biology

Fig. 5

From: Clustering Deviation Index (CDI): a robust and accurate internal measure for evaluating scRNA-seq data clustering

Fig. 5

Comparison between CDI and other internal indices. A The barplot shows the cluster number of the benchmark label set and the label sets selected by different internal indices. Each panel compares the cluster number of a benchmark label set with all other selected label sets for one dataset. For the dataset with both main type and subtype benchmark label sets (SD3, CORTEX, and RETINA), the panel with the subtype benchmark label set is listed with “(subtype)”. B The boxplot shows the external indices of the label sets selected by different internal indices. The external indices are calculated by comparing the selected label sets and the benchmark label sets. C The boxplot shows the Spearman correlation between the internal and external indices while ranking all candidate label sets. The dots in B and C mark the external indices or Spearman correlations for main type benchmark label sets. The triangles mark the external indices or Spearman correlations for subtype benchmark label sets

Back to article page

Genome Biology

ISSN: 1474-760X

Contact us