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Table 1 Hardware specifications of computational resources used for simulation and benchmarking

From: MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions

Identifier

CPU model

System memory

Operating system

Accelerator (GPU)

Laptop A

Intel Core i9-9880H(8 cores)

64 GB (4x 16 GB, DDR4 UDIMM 2667 MT/s dual-channel)

Arch Linux (Linux v5.17.1)

NVIDIA Quadro RTX 4000 (8 GB)

Server A

2x

AMD EPYC 7742 (2x 64 cores)

2048 GB (32x 64 GB, RDIMM DDR4 2933 MT/s eight-channel)

RHEL 8.5 (Linux v4.18.0-305)

N/A

Server B

2x

Intel Xeon Gold 6138 (2x 20 cores)

192 GB (12x 16 GB, RDIMM DDR4 2666 MT/s six-channel)

RHEL 7.9.2009 (Linux v3.10.0-1160.6.1)

Server C

2x

Intel Xeon Gold 6230R (2x 26 cores)

192 GB (12x 16 GB, RDIMM DDR4 2933 MT/s six-channel)

Server D

2x

Intel Xeon Gold 6126 (2x 12 cores)

384 GB (24x 16 GB, RDIMM DDR4 2666 MT/s six-channel)

4x

NVIDIA Tesla P100 (16 GB)