Table 2 Comparison of BESST scaffolding results of contigs before and after correction
From: metaMIC: reference-free misassembly identification and correction of de novo metagenomic assemblies
Species | Correction tool | #Contigs | #Total aligned length | Total length(≥0bp) | Total length(≥1000bp) | Misassembled contig length | NA50 | #Mis |
|---|---|---|---|---|---|---|---|---|
M. abscessus | raw | 262 | 5,045,398 | 5,160,404 | 5,129,190 | 1,303,084 | 45,957 | 27 |
MEC | 268 | 5,045,445 | 5,160,476 | 5,129,015 | 982,986 | 40,129 | 24 | |
metaMIC | 274 | 5,045,398 | 5,160,404 | 5,129,190 | 755,186 | 47,488 | 17 | |
V. cholerae | raw | 201 | 3,936,390 | 3,958,533 | 3,921,645 | 597,777 | 43,122 | 10 |
MEC | 202 | 3,935,796 | 3,958,533 | 3,921,645 | 597,183 | 43,122 | 9 | |
metaMIC | 205 | 3,936,390 | 3,958,533 | 3,921,645 | 205,644 | 43,123 | 7 | |
R. sphaeroides | raw | 231 | 4,492,687 | 4,519,491 | 4,486,060 | 359,217 | 75,728 | 5 |
MEC | 230 | 4,492,749 | 4,519,550 | 4,486,119 | 168,646 | 78,611 | 4 | |
metaMIC | 232 | 4,493,107 | 4,520,061 | 4,486,630 | 51,809 | 78,920 | 3 | |
B. cereus | raw | 141 | 5,310,597 | 5,381,347 | 5,369,165 | 332,560 | 104,970 | 7 |
MEC | 140 | 5,310,816 | 5,381,940 | 5,369,758 | 332,001 | 104,970 | 7 | |
metaMIC | 140 | 5,311,395 | 5,382,650 | 5,370,789 | 175,743 | 104,970 | 5 |