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Table 1 BraLan3 assembly and annotation quality comparison. All statistics were calculated with the chromosome-level assembly when available or, alternatively, with the scaffold-level assembly; scaffold vs. chromosome-level especially impacts N50 and L50. BUSCO completeness score was performed with the metazoan gene universe in all cases. BraLan3 corresponds to the assembly presented in this work, BraLan2 refers to the previously available B. lanceolatum assembly [8]

From: Parallel evolution of amphioxus and vertebrate small-scale gene duplications

 

Total length (Mbp)

N50 (Mbp)

L50

# sequences >1Mbp

% length in > 1 Mbp

# gaps in > 1 Mbp

BUSCO completeness

BraLan3

474.79

23.75

8

19

96.78%

1523

97.60%

BraLan2

495.35

1.30

79

108

56.95%

54787

74.50%

B. floridae

513.46

25.44

9

20

94.70%

20731

97.40%

B. belcheri

426.12

2.33

52

121

75.60%

12649

98.70%

Zebrafish (GRCz11)

1,373.45

54.30

11

25

97.96%

17943

98.00%

Chicken (GRCg6a)

1,065.35

91.32

4

37

99.27%

866

93.00%

Human (GRCh38)

3,099.73

145.14

9

25

99.71%

997

100.00%

Mouse (GRCm39)

2,728.21

130.53

9

21

99.86%

268

100.00%