| # Scaffolds | # bp from scaffolds | Top50 | N50 | L50 | Largest scaffold length (bp) | # Scaffolds on GRCh38 | # novel scaffolds | # bp from novel scaffolds | # Complete BUSCO (4,104 BUSCO) | # NMs 95+% mapped (50,052 NMs) | # NRs 95+% mapped (15,544 NRs) |
---|---|---|---|---|---|---|---|---|---|---|---|---|
PB_canu (contigs) | 2828 | 2,904,842,414 | 1,356,447,278 (46.69%) | 13,480,407 | 57 | 62,208,403 | 2,526 | 302 | 16,403,702 | 3890 | 49,287 | 15,115 |
PB_canu + 10X_arcs (scaffolds) | 2032 | 2,904,931,213 | 2,067,627,443 (71.17%) | 35,058,531 | 26 | 121,623,092 | 1,764 | 268 | 14,867,391 | 3800 | 49,570 | 15,207 |
PB_canu + HiC_salsa (scaffolds) | 1891 | 2,905,381,691 | 2,377,981,926 (81.84%) | 46,871,224 | 19 | 180,772,639 | 1,617 | 274 | 15,303,825 | 3892 | 49,495 | 15,177 |
PB_canu + 10X_arcs + HiC_salsa (scaffolds, HCC1395BL_v1.0) | 1645 | 2,905,196,510 | 2,691,295,119 (92.62%) | 69,970,292 | 14 | 181,209,810 | 1,406 | 244 | 14,104,388 | 3889 | 49,613 | 15,227 |