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Fig. 9 | Genome Biology

Fig. 9

From: Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information

Fig. 9

Comprehensive evaluation results. a The heatmap shows the rank of each tool’s distance enrichment score (DES) in all 5 datasets and the average DES rank. Tools are sorted by the average DES rank. The actual rank for each tool in each dataset is labeled on the corresponding location. b The rank heatmaps of 3 relative accuracy metrics (left: F1 score; medium: precision; right: recall). Tools in each heatmap are ordered by corresponding metric. The actual ranks are labeled on the heatmap. c The average rank of tools’ DES in simulated and real dataset. Tools are ordered by the average ranks. The actual ranks are labeled on the heatmap. d The scatter plot of average running time and maximum memory usage of each tool in all dataset. The point shape indicates different tools. The average running time of each tool in each dataset is computed by summing up user and system time and then dividing it by the cell type number in the corresponding dataset

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Genome Biology

ISSN: 1474-760X

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