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Fig. 6 | Genome Biology

Fig. 6

From: Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information

Fig. 6

Evaluation results in the mouse cortex dataset. a Spatial cell type annotation result of mouse cortex dataset’s ST data. Color indicates the spot’s cell type. b The dot plot of tools’ average distance enrichment scores (DES), sorted by the DESs. c The dot plots of tools’ average relative accuracy metrics (F1 score, precision, recall), all sorted by the F1 score. d The heatmap shows the average common interaction number between each tool’s result per cell type in the mouse cortex dataset. Color displays the interaction number. The bar plot on the top shows the average interaction number predicted by each tool per cell type. The actual number is labeled on the top of each bar. e The dot plot of top 10 most common interactions among all tools in the mouse cortex dataset, sorted by interaction’s common count. The dot size indicates the top rank percentage of the interaction in corresponding tool’s result. The dot color reflects interaction’s spatial distance tendency in the mouse cortex dataset. The CCI tools are grouped by their model types

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