Skip to main content
Fig. 4 | Genome Biology

Fig. 4

From: Normalization and de-noising of single-cell Hi-C data with BandNorm and scVI-3D

Fig. 4

Cell-cell similarity analysis to recover cell type relationships. Pairwise cell similarity scores for the Lee2019 data set are obtained by edge weights of the shared nearest neighbor graphs constructed from normalized data (low-dimensional embeddings from scVI-3D, scHiCluster, and Higashi, and the first 50 PCs for BandNorm). The inferred relationships between the cell types are depicted by the dendrogram from the hierarchical clustering of the cells

Back to article page