Table 2 Overview of genotypers
From: KAGE: fast alignment-free graph-based genotyping of SNPs and short indels
Genotyper | Alignment-free/alignment-based | Uses prior haplotype-information |
|---|---|---|
Malva | Alignment-free | No |
Bayestyper | Alignment-free | No |
PanGenie | Alignment-free | Yes |
Graphtyper | Alignment-based | No |
GATK | Alignment-based | No |