Genomics and epigenetics guided identification of tissue-specific genomic safe harbors

Table 2 Identified GSH sites in brain from the GTEx data

GSH_ID	Position	FDR	AF	TAD gene density	Active regions	Gene	Location	Dataset
BRN_GSH_1	chr1:247027889-247027890	n.s	0.46	NA	4_Tx,5_TxWk	AHCTF1	Intron	GTEx
BRN_GSH_2	chr12:987960-987961	n.s	0.14	NA	4_Tx,5_TxWk	WNK1	Intron	GTEx
BRN_GSH_3	chr22:18283915-18283916	n.s	0.32	NA	5_TxWk	MICAL3	Intron	GTEx
BRN_GSH_4	chr4:5834890-5834891	n.s	0.22	NA	4_Tx,5_TxWk	CRMP1	Intron	GTEx
BRN_GSH_5	chr7:5553845-5553846	n.s	0.15	NA	1_TssA,2_TssAFlnk	LOC221946	Intron	GTEx

GSH_ID: Unique GSH ID, Position: Genomic coordinates for the GSH (hg19), FDR: eQTL FDR value, n.s. non-significant, AF: pMEI allele frequency, TAD gene density: gene density of GSH TAD, NA GSH not assigned to a TAD, Active regions: active transcription region based on ChromHMM states, Gene: GSH overlapping gene, Location: position of GSH (intron, exon, intergenic), Dataset: data source, GTEX the Genotype-Tissue Expression Project

ISSN: 1474-760X