Table 1 False duplication statistics in previous and VGP assemblies
From: Widespread false gene gains caused by duplication errors in genome assemblies
| Â | Zebra finch Pre. (Sanger) | Zebra finch VGP (bTaeGut1) | Hummingbird Pre. (Illumina) | Hummingbird VGP (bCalAnn1) | Platypus Pre. (Sanger) | Platypus VGP (mOrnAna1) | |
|---|---|---|---|---|---|---|---|
Heterozygosity (%) | - | 0.95 | - | 0.34 | - | 0.22 | |
Total false duplication length (Mbp) | 195.6 (15.9 %) | 24.1 (2.3 %) | 40.9 (3.7 %) | 5.8 (0.5 %) | 126.0 (6.3 %) | 5.6 (0.3 %) | |
Type | Heterotype (Mbp) | 190.5 (15.5 %) | 23.1 (2.2 %) | 13.7 (1.2 %) | 5.4 (0.5 %) | 72.0 (3.6 %) | 5.0 (0.3 %) |
Homotype (Mbp) | 5.1 (0.4 %) | 0.9 (0.1 %) | 27.2 (2.5 %) | 0.4 (<0.1 %) | 54.0 (2.7 %) | 0.6 (<0.1 %) | |
Location | Same scaffold (Mbp) | 46.4 (3.8 %) | 22.2 (2.1 %) | 2.9 (0.3 %) | 4.8 (0.5 %) | 22.7 (1.1 %) | 3.4 (0.2 %) |
Different scaffold (Mbp) | 149.3 (12.1 %) | 1.9 (0.2 %) | 38.0 (3.4 %) | 1.0 (<0.1 %) | 103.3 (5.2 %) | 2.2 (0.1 %) | |
Total assembly Length (Mbp) | 1232.1 (100 %) | 1058.0 (100 %) | 1105.7 (100 %) | 1059.7 (100 %) | 1995.6 (100 %) | 1858.5 (100 %) | |