Table 1 Enrichment of prioritized genes for CornCyc pathway annotations
PNC | Minimum percentile | Pathway | Enrichment | P-value (FDR) |
|---|---|---|---|---|
Observed | NA | Triacylglycerol degradation (LIPAS-PWY) | 0.76 | 2.9 × 10−5 (0.0093) |
Aerobic respiration III (alternative oxidase pathway) (PWY-4302) | 0.70 | 3.7 × 10−5 (0.0093) | ||
Predicted | 90% | Glycolysis IV (plant cytosol) (PWY-1042) | 1.41 | 7.8 × 10−7 (0.00038) |
Rubisco shunt (PWY-5723) | 1.40 | 2.1 × 10−4 (0.015) | ||
Glycolysis I (from glucose 6-phosphate) (GLYCOLYSIS) | 1.36 | 1.0 × 10−5 (0.0025) | ||
Gluconeogenesis I (GLUCONEO-PWY) | 1.36 | 8.4 × 10−5 (0.0083) | ||
Glycolysis II (from fructose 6-phosphate) (PWY-5484) | 1.36 | 2.4 × 10−5 (0.0029) | ||
Triacylglycerol degradation (LIPAS-PWY) | 0.65 | 1.7 × 10−5 (0.0027) | ||
Very long-chain fatty acid biosynthesis I (PWY-5080) | 0.59 | 3.1 × 10−4 (0.019) | ||
Trans-zeatin biosynthesis (PWY-2681) | 0.29 | 1.6 × 10−4 (0.013) | ||
99% | L-leucine biosynthesis (LEUSYN-PWY) | 3.66 | 9.5 × 10−4 (0.043) | |
Fatty acid β-oxidation II (peroxisome) (PWY-5136) | 3.59 | 4.8 × 10−4 (0.033) | ||
Glyoxylate cycle (GLYOXYLATE-BYPASS) | 2.99 | 6.3 × 10−4 (0.033) | ||
TCA cycle II (PWY-5690) | 2.51 | 5.0 × 10−4 (0.033) | ||
Gluconeogenesis I (GLUCONEO-PWY) | 2.24 | 2.6 × 10−4 (0.032) | ||
Glycolysis IV (plant cytosol) (PWY-1042) | 2.16 | 2.0 × 10−4 (0.032) | ||
Glycolysis II (from fructose 6-phosphate) (PWY-5484) | 2.16 | 2.0 × 10−4 (0.032) | ||
Glycolysis I (from glucose 6-phosphate) (GLYCOLYSIS) | 2.09 | 4.4 × 10-4 (0.033) | ||
Aerobic respiration I (cytochrome c) (PWY-3781) | 0.31 | 4.3 × 10−6 (0.0021) | ||
Triacylglycerol degradation (LIPAS-PWY) | 0.23 | 6.5 × 10−4 (0.033) | ||
Very long-chain fatty acid biosynthesis I (PWY-5080) | 0 | 6.6 × 10−4 (0.033) |