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Fig. 1 | Genome Biology

Fig. 1

From: PtoNF-YC9-SRMT-PtoRD26 module regulates the high saline tolerance of a triploid poplar

Fig. 1

Chinese white poplar genome assembly, genomic features, and RNA-seq analysis after salt treatment. A The circo diagram of Chinese white poplar genome, which from outer to inner separately represented haplotype, chromosome, gene density, transposable element density, read mapping depth, and colinear links. B The volcano plot shows the differentially expressed genes (DEGs) in the RNA-seq analysis of triploid Chinese white poplar after 300 mM NaCl treatment compared to the double-distilled water control. The DEGs upregulated were represented by red dots, the downregulated ones were indicated by blue dots. The gray dots represented the genes without significant changes. The black dot represents typical salt-stress-responsive genes, including PtoERD7.1 (P.x_tomentosa28552), PtoERD7.2 (P.x_tomentosa31148), PtoERD7.3 (P.x_tomentosa29872), PtoPUB79.1 (P.x_tomentosa72982), PtoPUB79.2 (P.x_tomentosa70753), PtoPUB79.3 (P.x_tomentosa71860), PtoPIP2B.1 (P.x_tomentosa61890), PtoPIP2B.3 (P.x_tomentosa59726), PtoMPK3.1 (P.x_tomentosa13975), PtoMPK3.2 (P.x_tomentosa17411), PtoMPK3.3 (P.x_tomentosa10444), PtoRbohD.1 (P.x_tomentosa56106), PtoRbohD.2 (P.x_tomentosa57812), PtoRbohD.3 (P.x_tomentosa54409), PtoRD26.1 (P.x_tomentosa47952), PtoRD26.2 (P.x_tomentosa46818), PtoRD26.3 (P.x_tomentosa48940), PtoCIPK21.1 (P.x_tomentosa44463), PtoCIPK21.3 (P.x_tomentosa45540), PtoGSTU19.3 (P.x_tomentosa09261)

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