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Table 1 Mean precision, recall, and F-score on each empirical data set with each reference genome. Numbers in bold show the best precision, recall, and F-score for each species and reference genome

From: Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

Species Number of samples Reference genome Tool Mean precision Mean recall Mean F-score
M. tuberculosis 17 H37Rv BayesTyper 0.9995 0.9217 0.9579
    GraphTyper 0.9997 0.8938 0.9422
    Minos 0.9997 0.9181 0.9559
S. aureus 28 TW20 BayesTyper 0.9984 0.8669 0.9279
    GraphTyper 0.9990 0.7530 0.8545
    Minos 0.9988 0.8786 0.9347
   USA300 BayesTyper 0.9993 0.8671 0.9283
    GraphTyper 0.9995 0.7506 0.8534
    Minos 0.9994 0.8792 0.9353
K. pneumoniae 17 GCF_000784945.1 BayesTyper 0.9990 0.9052 0.9495
    GraphTyper 0.9999 0.9063 0.9505
    Minos 0.9999 0.9143 0.9550
   GCF_001952915.1 BayesTyper 0.9995 0.8800 0.9346
    GraphTyper 0.9999 0.8788 0.9340
    Minos 0.9994 0.8922 0.9417
   GCF_003073315.1 BayesTyper 0.9996 0.9267 0.9617
    GraphTyper 0.9999 0.9297 0.9634
    Minos 0.9998 0.9367 0.9672
   GCF_003076555.1 BayesTyper 0.9994 0.9397 0.9686
    GraphTyper 0.9999 0.9387 0.9683
    Minos 0.9999 0.9438 0.9710
   GCF_011006575.1 BayesTyper 0.9995 0.9078 0.9511
    GraphTyper 0.9999 0.9075 0.9513
    Minos 0.9998 0.9238 0.9602