Fig. 1
From: Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes
Variant adjudication pipeline implemented by Minos. Input variants in one or more VCF file(s) are merged to make a deduplicated set of variants. When running on a single sample, the input VCF files could be from different tools. When joint genotyping across samples, there is one VCF file originating from each sample. Next, overlapping variants are clustered together—for example the variants at positions 7 and 8—allowing the construction of a non-nested variation graph. Genotype calls are made using read mapping to the graph