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Table 1 Pearson correlation (r) between observed and predicted CTCF binding across cell types. The third column shows r between observed and cross-validated JAMS predictions for models that were trained on each individual cell type. The fourth column shows the r between the predictions of the JAMS model that was trained on HEK293 and the observed ChIP-seq data in other cell lines

From: Toward a base-resolution panorama of the in vivo impact of cytosine methylation on transcription factor binding

Cell line

ChIP-seq peaks (n)

10-fold CV

HEK293-trained r

HEK293

135,717

0.69

–

H1

128,123

0.72

0.62

GM12878

39,535

0.69

0.54

HeLa-S3

65,865

0.72

0.60

HepG2

81,188

0.73

0.64

K562

85,122

0.74

0.68