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Fig. 3 | Genome Biology

Fig. 3

From: DeCAF: a novel method to identify cell-type specific regulatory variants and their role in cancer risk

Fig. 3

cfQTL validation. A π1 replication of marginal, cancer, and TIMER and xCell cfQTLs in GTEx. B ERAP2 manhattan plot with top: Epithelial cell cfQTL (most significant cell type), middle: Marginal, and bottom: all cfQTL and tsQTL significance levels. Red highlighted SNP is rs26481. C Correlation between cell fraction (x-axis) and allelic fraction (y-axis). Point size indicates number of reads

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Genome Biology

ISSN: 1474-760X

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