Fig. 3
From: Interspecific hybridization in tomato influences endogenous viral sRNAs and alters gene expression
sRNA size distribution and DCL2 dependency. a Normalized sRNA counts for P4042 (blue line) compared to lyc (red line) plotted by size for − DESL, + DESL, and non-DESL (top panel) and mapping to each TE order (bottom panels). b Normalized sRNA counts plotted by size in dcl2 mutant (green) compared to its WT (dark blue), from − D2SL (downregulated sRNA loci), + D2SL (upregulated sRNA loci), and non-D2SL (non-differentially expressed sRNA loci). c Normalized sRNA counts plotted by size in P4042 from − DESL, + DESL, and non-DESL that overlap − D2SL, + D2SL, and non-D2SL in dcl2. The red line, sRNA counts for lyc; blue line, sRNA counts for P4042; solid line, counts for all sRNA loci in each group category; dotted line, counts for sRNAs in each category that map to EPRVs. Inset with expanded y-axes for − DESL/ − D2SL. d EPRV contribution to each − D2SL group in c top panel in each F4 plant is represented by different symbols. Box plot elements: box limits, upper and lower quartiles; center line, median; whiskers, from each quartile to the minimum or maximum