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Fig. 5 | Genome Biology

Fig. 5

From: Refining colorectal cancer classification and clinical stratification through a single-cell atlas

Fig. 5

T cell clusters in colon and colorectal tumors. A t-SNE of 22525 T cells colored by distinct clusters. B t-SNE plot showing the variable expression of T cell specific marker genes across various clusters. C Boxplots show the distribution of cell types in two CRC balk expression datasets, within tumors with varying CMS status. The whiskers depict the 1.5 x IQR. The P-values for pairwise t-tests comparisons (with Benjamini-Hochberg correction) of cell abundance across CMS are shown in the figure. Note “NS”: P > 0.05, *P </=0.05, **P </=0.01, ***P </=0.001, ****P </=0.0001

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