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Table 1 PEGR API fields that accept analysis results

From: PEGR: a flexible management platform for reproducible epigenomic and genomic research

Field

Format

Example

userEmail

String

xxx@xxx.xxx

run

Long

123

sample

Long

10023

genome

String

“sacCer3”

historyId

String

99afe35e5e550d2c

history_url

String

https://xxx.xxx/view?id=99afe35e5e550d2c

alignmentId

Long

12345

workflowId

String

“b7p9d3k629e985d6”

workflowStepId

String

“d42c9e9785b96e77”

statsToolId

String

“bam_to_scidx_output_stats”

toolId

String

“toolshed.g2.bx.psu.edu/repos/iuc/bam_to_scidx/bam_to_scidx/1.0.1”

toolCategory

String

“output_bamToScidx”

parameters

{“parameterName”: “parameterValue”}

{“dbkey”:”sacCer3”,“require_proper_mate_pairing”:0}

statistics

[{“statisticsName”: “statisticsValue”}]

[{“genomeCoverage”:0.0206}]

datasets

[{“type”:“xxx”,“id”:“xxx”,“uri”:“xxx”}]

[{“type”:“scidx”,“id”:“a39ec9e14951b012”,“uri”:“https://xxx.xxx/datasets/9e14951 a39ec b012”}]

toolStderr

String

“some error”