From: PEGR: a flexible management platform for reproducible epigenomic and genomic research
Field | Format | Example |
---|---|---|
userEmail | String | |
run | Long | 123 |
sample | Long | 10023 |
genome | String | “sacCer3” |
historyId | String | 99afe35e5e550d2c |
history_url | String | |
alignmentId | Long | 12345 |
workflowId | String | “b7p9d3k629e985d6” |
workflowStepId | String | “d42c9e9785b96e77” |
statsToolId | String | “bam_to_scidx_output_stats” |
toolId | String | “toolshed.g2.bx.psu.edu/repos/iuc/bam_to_scidx/bam_to_scidx/1.0.1” |
toolCategory | String | “output_bamToScidx” |
parameters | {“parameterName”: “parameterValue”} | {“dbkey”:”sacCer3”,“require_proper_mate_pairing”:0} |
statistics | [{“statisticsName”: “statisticsValue”}] | [{“genomeCoverage”:0.0206}] |
datasets | [{“type”:“xxx”,“id”:“xxx”,“uri”:“xxx”}] | [{“type”:“scidx”,“id”:“a39ec9e14951b012”,“uri”:“https://xxx.xxx/datasets/9e14951 a39ec b012”}] |
toolStderr | String | “some error” |