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Fig. 5 | Genome Biology

Fig. 5

From: PEGR: a flexible management platform for reproducible epigenomic and genomic research

Fig. 5

Sequencing run tracking and bioinformatics in PEGR. A Browser shot of PEGR Sequencing run interface displaying multiple sequencing runs at various stages of completion and their associated projects and sequencing cohorts. B Example Galaxy workflow to communicate with PEGR. Galaxy tools POST relevant sample metadata using PEGR’s RESTful API to PEGR. If an error is detected in the Galaxy workflow, this information is also communicated to PEGR and visualized with a distinct color. C Browser shot of PEGR’s workflow tracking and quality control dashboard. Sample information and hyperlinks to individual sample metadata is on the left, the Galaxy workflow status in the middle, and sequencing quality control statistics (e.g., read depth, mapping %) is viewable on the right

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