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Table 1 Nine repeat loci with the repeat count detection by Sanger sequencing, HipSTR on 300X short-read data and DeepRepeat/Tandem-genotypes/RepeatHMM on 38X long read data for NA12878

From: DeepRepeat: direct quantification of short tandem repeats on signal data from nanopore sequencing

Repeat loci Motif GRCh38 length Sanger HipSTR DeepRepeat Tandem-genotypes RepeatHMM
chr12:4702128-4702202 CCA 74 23 24 25 25 27 27 26 27 24 24
chr17:10995712-10995775 CTG 63 19 20 20 20 20 20 20 22 19 20
chr16:73546662-73546741 TGC 79 25 26 24 24 27 27 24 24 21 23
chr7:152384548-152384614 CAC 66 19 22 18 20 20 24 22 25 20 23
chr1:161051967-161052060 CAC 93 21 26 N.A. N.A. 19 24 21 26 21 26
chrX:55366379-55366473 TATC 94 22 23 23 23 24 24 23 23 23 24
chr10:107609688-107609784 ATCT 96 18 21 19 22 19 22 19 23 19 22
chr6:145272942-145273029 AGAT 87 14 18 14 18 14 18 14 17 14 19
chr4:42555085-42555198 TATC 113 26 27 26 27 28 28 27 28 27 27