From: One Cell At a Time (OCAT): a unified framework to integrate and analyze single-cell RNA-seq data
Dataset | ncells | ngenes | m | d | OCAT | scVI | Seurat | SIMLR |
---|---|---|---|---|---|---|---|---|
Romanov | 2,881 | 24,341 | 20 | 30 | 0.6443 | 0.5436 | 0.6343 | 0.4234 |
Zeisel | 3,005 | 19,972 | 50 | 30 | 0.7884 | 0.7126 | 0.6724 | 0.7373 |
Retina | 19,829 | 13,166 | 60 | 60 | 0.8742 | 0.7572 | 0.7865 | 0.6337 |
PBMC 68k | 68,579 | 1000 | 40 | 40 | 0.5750 | 0.4638 | 0.4899 | 0.5344 |