Skip to main content
Fig. 3 | Genome Biology

Fig. 3

From: Physical separation of haplotypes in dikaryons allows benchmarking of phasing accuracy in Nanopore and HiFi assemblies with Hi-C data

Fig. 3

Distribution of mapping qualities for Hi-C reads. Density plots are shown for the distribution of mapping qualities for Hi-C read mappings with HiC-Pro (bowtie2, maximum possible MAPQ 42). In the A Nanopore assembly, the majority of trans-contacts between haplotypes have high MAPQ around 30, whereas they have lower MAPQ of 0–10 in the B, C HiFi assemblies

Back to article page

Genome Biology

ISSN: 1474-760X

Contact us