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Fig. 1 | Genome Biology

Fig. 1

From: Physical separation of haplotypes in dikaryons allows benchmarking of phasing accuracy in Nanopore and HiFi assemblies with Hi-C data

Fig. 1

A, B Raw read length histograms for the Nanopore and HiFi reads. The N50 values are indicated with a red line. C–E Genome-wide read-depth histograms of the C Nanopore and D–E HiFi assemblies. An assembly with collapsed regions will show a bimodal distribution with a first peak at haploid coverage (indicated by blue line) and a second peak at 2× haploid coverage (indicated by red line). The green line represents the mid-point and genomic regions with coverage above the mid-point are here defined as collapsed regions (Nanopore: 35× coverage; HiFi: 62× coverage). The HiFi assemblies appear to be fully phased whereas the Nanopore assembly has collapsed regions

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Genome Biology

ISSN: 1474-760X

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