Table 1 RiboSNitch abundance and distribution by genomic region. The results are compiled from the analysis of the transcriptomes of the 879 geo-referenced Eurasian Arabidopsis accessions with full genome sequence. riboSNitches were designated according to the criterion of Halvorsen et al. [2]. SNP, single nucleotide polymorphism; rbSN, riboSNitch; non-rbSN, non-riboSNitch

All

3,830,264

1,038,347

2,791,917

0.27

0.37

Missense variants

1,003,976

280,246

723,730

0.28

0.39

Missense variant and splice region variants

15,275

4698

10,577

0.31

0.44

Synonymous variants

725,171

190,732

534,439

0.26

0.36

3′ UTR variants

401,263

108,147

293,116

0.27

0.37

Stop gained

21,954

5766

16,188

0.26

0.36

Stop gained and splice region variants

465

129

336

0.28

0.38

5′ UTR variants

246,576

60,695

185,881

0.25

0.33

5′ UTR premature start codon gain variants

36,060

9808

26,252

0.27

0.37

Intron variants

1,254,339

344,296

910,043

0.27

0.38

Splice acceptor variant and intron variants

3622

1001

2621

0.28

0.38

Splice region variants

2359

674

1685

0.29

0.40

Splice donor variant and intron variants

3581

1079

2502

0.30

0.43

Splice region variant and intron variants

100,386

27,018

73,368

0.27

0.37

Splice region variant and stop retained variants

22

7

15

0.32

0.47

Splice region variant and synonymous variants

11,434

3078

8356

0.27

0.37

Start lost

1031

281

750

0.27

0.37

Start lost and splice region variants

11

3

8

0.27

0.38

Stop lost

1277

356

921

0.28

0.39

Stop lost and splice region variants

21

9

12

0.43

0.75

Stop retained variants

1235

270

965

0.22

0.28

Initiator codon variants

202

53

149

0.26

0.36

Initiator codon variant and splice region variants

4

1

3

0.25

0.33