Table 2 Characteristics of four real microbiome datasets. NORA represents new-onset untreated rheumatoid arthritis. The second and the third columns respectively list the number of taxa and sample size of each filtered dataset (prevalence ≥10%, library size ≥1000)
From: LinDA: linear models for differential abundance analysis of microbiome compositional data
| Â | m | n | u | c |
|---|---|---|---|---|
CDI | 123 | 183 | CDI/Diarrhea control (94 v.s. 89) | Â |
IBD | 579 | 81 | Crohn’s disease/Healthy (62 v.s. 19) | Antibiotic use (n/y, 48 + 19 v.s. 14 + 0) |
RA | 438 | 72 | NORA/Healthy (44 v.s. 28) | Â |
SMOKE | 209 | 132 | Smoke (n/y, 67 v.s. 65) | Female/Male (31 + 16 v.s. 36 + 49) |