StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities

Table 2 The strains predicted by MIDAS match the dominant strains predicted by StrainGE

^aFang et al. [25]
^bThe actual strain corresponding to ST1 (3_2_53FAA) was whole-genome sequenced by Fang et al. PA45B and 3_2_53FAA share 99.9% average nucleotide identity based on whole-genome comparative genomics analysis
^cMLST profile was not represented by any reference genome in the StrainGE database. StrainGST predicted the closest reference within the StrainGE database, which was within the same phylogroup

ISSN: 1474-760X