Table 5 Performance of the three tools on two HBV mix-strain datasets
From: VirStrain: a strain identification tool for RNA viruses
Sample name | Actual strains present in the sample | VirStrain | Centrifuge | Krakenuniq | |||
|---|---|---|---|---|---|---|---|
Strains detected | Predicted abundance | Strains detected | Predicted abundance | Strains detected | Predicted abundance | ||
ERR3253398 | MK720631.1 | Y | 89% | Y | 12% | N | - |
MK720628.1 | Y | 11% | N | - | N | - | |
ERR3253399 | MK720631.1 | Y | 80% | Y | 14% | N | - |
MK720628.1 | Y | 20% | N | - | N | - | |